导图社区 论文时间轴
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论文时间轴
2000.1月
Improvement of bacterial blight resistance of 'Minghui 63', an elite restorer line of hybrid rice, by molecular marker-assisted selection
转基因技术/基因工程：XA21，一种BB抗性基因
2000.10月
Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid
基因组分析：调控水稻颗粒品质和胚乳不透明度的QTLs
2001.5月
Identification and mapping of two brown planthopper resistance genes in rice
基因组分析：两个抗BPH的基因组区域
rice breeding programs
Separation of the two-locus inheritance of photoperiod sensitive genic male sterility in rice and precise mapping the pms3 locus
群体遗传：Pms3的定位
rice breeding programs
PSGMS
2001.8月
Pathotypes of Pyricularia grisea in rice fields of central and southern China
rice breeding programs
群体遗传学：分析中国13个中部和南部省份的稻瘟病致病类型
2001.10月
Identification of an 85-kb DNA fragment containing pms1, a locus for photoperiod-sensitive genic male sterility in rice
基因组学：定位pms1
2001.11月
Mapping quantitative trait loci for milling quality, protein content and color characteristics of rice using a recombinant inbred line population derived from an elite rice hybrid
基因组学：糙米率的QTLs、精米率的QTLs、Wx gene(由QTLs调节、决定蛋白质含量、面粉色泽）
Quantitative genetic basis of gelatinization temperature of rice
基因组学：定位了8个跟水稻淀粉糊化性质相关的基因座；其中Wx gene 和染色体11扮演主要作用
2002.3月
Identification of quantitative trait loci and epistatic interactions for plant height and heading date in rice
基因组学：与株高和抽穗期有关的QTLs
2002.7月
New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line
基因组学：定位白叶枯病抗性基因Xa25（t)的基因座，且基因组位置类似于稻瘟病抗性基因Pi-ta、Pi-ta2
2002.12月
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.)
基因组：2240种SSR标记可作为公共的研究资源
2003.2月
Characterization of a unique genomic clone located 5 ' upstream of the Oshsp16.9B gene on chromosome 1 in rice (Oryza sativa L. cv Tainung No. 67)
基因组学：Oshsp 16.9A、B、C均在1号染色体上
2003.3月
Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid
基因组学和群体遗传学：解释杂种优势的遗传基础，可能会为一个世纪以来的辩论画上句号
Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley
稻瘟病
比较基因组学：帮助理解基因组的功能和进化动力
2003.5月
Site-independently integrated transgenes in the elite restorer rice line Minghui 63 allow removal of a selectable marker from the gene of interest by self-segregation
基因组学：基因位点的整合和选择性标记的转移将帮助转基因株系TT51-1对抗病虫感染和爆发
cryIAb/cryIAc：insecticidal protein gene
hph：selectable marker gene
2003.8月
Development of enhancer trap lines for functional analysis of the rice genome
基因组:GAL4/VP16-UAS element为水稻的增强子陷阱提供了一个有用的系统（enhancer trap system
2004.2月
Rice mutant resources for gene discovery
基因组：总结性文章，回顾了水稻突变体资源现状，基因功能性分析的工具，并对通过国际合作加快水稻基因的发现作了展望
Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein
基因组学/转基因：Xa26，抗白叶枯病.
2004.7月
Male and female gamete abortions, and reduced affinity between the uniting gametes as the causes for sterility in an indicajaponica hybrid in rice
群体遗传学：杂种不育、配子不育
胚囊、花粉、花粉管
2005.1月
Genetic dissection of embryo sac fertility, pollen fertility, and their contributions to spikelet fertility of intersubspecific hybrids in rice
rice breeding programs
基因组学：S5位点：由小穗育性分析确定的广亲和性位点，同时是胚囊育性的主要位点；5号染色体的一个QTL对花粉育性有主要影响；8号染色体一个QTL对小穗育性有主要影响
Optimising the tissue culture conditions for high efficiency transformation of indica rice
转基因：两种new media 能极大的促进籼稻的转化效率
2005.5月
The main effects, epistatic effects and environmental interactions of QTLs on the cooking and eating quality of rice in a doubled-haploid line population
基因组学：分析了对AC、GC、GT有主要效应的QTLs
2005.6月
Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63
基因工程：收集和分析籼稻的ESTs
2005.8月
Identification and confirmation of three neutral alleles conferring wide compatibility in inter-subspecific hybrids of rice (Oryza sativa L.) using near-isogenic lines
rice breeding programs
群体遗传学：3个QTLs，f5,f6,S5。f5对花粉和小穗育性有影响；f6和S5对小穗育性有影响
2005.9月
How can we use genomics to improve cereals with rice as a reference genome
基因组：宏观性论文
2005.10月
Delimitation of the rice wide compatibility gene S5(n) to a 40-kb DNA fragment
intersubspecific hybrid breeding programs
S5''gene
rice breeding programs.
基因组学
2005.11月
Transgenic indica rice plants harboring a synthetic cry2A gene of Bacillus thuringiensis exhibit enhanced resistance against lepidopteran rice pests
转基因：主要株系有2A-1、2、3、4
cry2A* gene
2005.12月
QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid
群体遗传学
对低氮的耐受性
2006.1月
Fine mapping of f5-Du, a gene conferring wide-compatibility for pollen fertility in inter-subspecific hybrids of rice (Oryza sativa L.)
rice breeding programs.
基因组学：f5区域由5个BAC或PAC组成
RMD a rice mutant database for functional analysis of the rice genome
基因组学
RMD
2006.2月
Genetic basis of drought resistance at reproductive stage in rice Separation of drought tolerance from drought avoidance
抗旱、耐旱
群体遗传学
Targeting xa13, a recessive gene for bacterial blight resistance in rice
breeding programs
xa13
4个标记E6a、SR6、ST9、SR11与xa13紧密连锁
2006.3月
Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray
低氮压力
基因工程
2006.4月
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
GS3
基因组学：GS3可能对颗粒大小有消极作用
2006.5月
Promoter mutations of an essential gene for pollen development result in disease resistance in rice
xa13 allele:抗白叶枯病。由Xa13 allele的启动子突变形成
基因组学
2006.6月
Establishment of a patterned GAL4-VP16 transactivation system for discovering gene function in rice
二进制反式激活系统GAL4-VP16–UAS
GAL4-VP16:反式激活因子基因
UAS:upstream activation sequence。GAL4的顺式作用元件
基因组学
2006.7月
Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa)
NILs development strategies
基因组学/群体遗传学
四个性状：SPP、GPP、HD、PH
2006.8月
Development of insect-resistant transgenic indica rice with a synthetic cry1C gene
cry1C* gene
resistance management strategy of transgenic rice
转基因技术：T1C-19（带有Cry1C* protein）能用来生产抗昆虫杂交水稻（抗蛀茎虫和甘薯麦蛾）。
Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice
SNAC1 gene ：与抗干旱、耐盐性有关
转基因水稻
2006.11月
Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs
为探究杂种优势的机制提供了新的途径
基因组学
2006.12月
Comparative analysis of gene expression at early seedling stage between a rice hybrid and its parents using a cDNA microarray of 9198 uni-sequences
为探究杂种优势的机制和表型变异与基因表达多态性之间的关系提供了有用的信息
基因组学
2007.3月
Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle
抗旱、耐盐
基因组学
organ-specific transcription responses
Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library
基因组学
T-DNA insertion
enhancer-trap mutant library
flanking sequence tags (FSTs)
2007.4月
High-throughput binary vectors for plant gene function analysis
基因组学：
High-throughput Binary Vectors
2007.5月
The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism
biosynthetic genes： GA3ox2 and GA20ox2
基因组学：YABBY1 (YAB1)起对赤霉素的生物合成起负反馈
2007.6月
Rice functional genomics research in China
基因组学：宏观性论文
rice functional genomics research programmes
2007.8月
Genetic basis of 17 traits and viscosity parameters characterizing the eating and cooking quality of rice grain
eating and cooking quality of rice grain
基因组学
2007.10月
Strategies for developing green super rice
绿色超级水稻：宏观性论文
2007.11月
Analysis of rice genes induced by striped stemborer (Chilo suppressalis) attack identified a promoter fragment highly specifically responsive to insect feeding
蛀茎虫
基因组学：对发展抗虫的转基因水稻有帮助
2008.1月
The QTL controlling amino acid content in grains of rice (Oryza sativa) are co-localized with the regions involved in the amino acid metabolism pathway
水稻颗粒质量
rice breeding programs.
基因组学
amino acid content (AAC)
2008.4月
Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice
qSSP7：控制小穗的数量，单孟德尔因子
qSSP7在杂交水稻纯合子中能进一步提高产量
spikelets per panicle (SPP)
2008.8月
A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice
S5
基因组学：S5-i、S5-j、S5-n(三等位基因系统
Sequence and expression analysis of the thioredoxin protein gene family in rice
硫氧还原蛋白
OsTrx：硫氧还原蛋白的编码基因
基因组学：OsTrx genes在不用组织、不同时期、不同环境因素下的表达水平不同
2008.9月
Rice 2020: A Call For An International Coordinated Effort In Rice Functional Genomics
功能基因组学：宏观性论文
Rice2020:the name of a project
RID1, encoding a Cys2His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice
基因组：RID1能诱导开花
2008.11月
KTHAKKUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa)
基因组学
OsHAK genes
RICD A rice indica cDNA database resource for rice functional genomics
功能基因组学：
生物信息
Rice Genome Research Current Status and Future Perspectives
基因组：宏观性论文
2009.1月
Mutant Resources in Rice for Functional Genomics of the Grasses
功能性基因组学
2009.3月
Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic stress responses in rice
氮的新陈代谢
GS gene：谷氨酰胺合成酶基因
GS1;2过度表达的植株展示出对盐、干旱、寒冷、除草剂的抗性
基因组学
2009.4月
FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice
FC1 gene：对木质素的合成和茎的强度有重要作用
基因组学
2009.5月
Over-expression of aspartate aminotransferase genes in rice resulted in altered nitrogen metabolism and increased amino acid content in seeds
氮的新陈代谢
AAT：天冬氨酸氨基转移酶
基因组学
AAT gene:OsAAT1~3
2009.6月
Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice
Hsp20 gene family
Hsp20:最丰富的小热休克蛋白质
HSP:热休克蛋白质
基因组学
Single feature polymorphisms between two rice cultivars detected using a median polish method
single feature polymorphisms (SFPs)
生物信息
2009.7月
Molecular analyses of the rice glutamate dehydrogenase gene family and their response to nitrogen and phosphorous deprivation
氮、磷
谷氨酸脱氢酶：由GDH gene表达
基因组学：four putative GDH genes (OsGDH1-4)
Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis
PAIR3 gene:在减数分裂时对同源染色体配对和联会十分重要
基因组学
2009.10月
The ankyrin repeat gene family in rice genome-wide identification, classification and expression profiling
基因组学
OsANK genes：ankyrin repeat genes
2009.11月
Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice
culm mechanical strength
基因组学
OsBC1L：多基因家族，包含BC1
2009.12月
Replication Protein A (RPA1a) Is Required for Meiotic and Somatic DNA Repair But Is Dispensable for DNA Replication and Homologous Recombination in Rice
基因组学
OsRPA1a
2010.2月
Genetic and Molecular Bases of Rice Yield
基因组学、分子生物学
Rice yield包括number of panicles, number of grains per panicle, and grain weight
2010.3月
A dynamic gene expression atlas covering the entire life cycle of rice
基因组学
2010.6月
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
群体遗传学、基因组
建立高密度连锁图的方法
2010.9月
A global analysis of QTLs for expression variations in rice shoots at the early seedling stage
基因组
eQTLs：QTLs的表达水平
e-traits：expression traits
single-feature polymorphisms (SFPs)
2010.11月
Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
GS3： a major quantitative trait locus for grain size
GS3 protein有4种结构域：organ size regulation (OSR) domain、a transmembrane domain、tumor necrosis factor receptor/nerve growth factor receptor (TNFR/NGFR) domain、von Willebrand factor type C (VWFC)
蛋白质组、基因组
2011.3月
Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives
S5
基因组学：
wide-compatibility gene (WCG)
OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice
纤维素
基因组学
Osbc1l4 (Oryza sativa brittle culm 1 like 4)
cellulose synthase genes (CESAs)
T-DNA insertion mutant library
2011.4月
Rice APOPTOSIS INHIBITOR5 Coupled with Two DEAD-Box Adenosine 5 '-Triphosphate-Dependent RNA Helicases Regulates Tapetum Degeneration
Programmed cell death (PCD)
API5:编码抗细胞凋亡蛋白质Api5的同源物
API5、AIP1、AIP2、CP1与配子不育有关
2011.5月
Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method
生物信息
2011.8月
Heterosis in Rice Seedlings Its Relationship to Gibberellin Content and Expression of Gibberellin Metabolism and Signaling Genes
杂种优势
endogenous gibberellin (GA)
2011.12月
Natural variation in GS5 plays an important role in regulating grain size and yield in rice
GS5的自然变异对增加水稻产量有帮助
基因组学
2012.2月
A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice
光周期敏感雄性不育（PSMS）
long noncoding RNAs (lncRNAs)
long-day– specific male-fertility–associated RNA (LDMAR)
2012.4月
CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome
基因组
rice CHD3 protein CHR729
H3K4me2、H3K27me3
2012.5月
XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice
xiao:a rice T-DNA insertion mutant for organ size
细胞生物学
2012.9月
Genetic composition of yield heterosis in an elite rice hybrid
对解释杂种优势的机制有帮助
A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice
S5
杂交不育
a killer-protector system encoded by three tightly linked genes [Open Reading Frame 3 (ORF3) to ORF5] regulates fertility in indica-japonica hybrids
2013.1月
Understanding Reproductive Isolation Based on the Rice Model
生殖隔离
总结性论文：杂种不育的分子特征
killer–protector system
2013.8月
OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth
AP（天冬氨酸蛋白酶）, OsAP65
蛋白质组、基因组
2013.12月
A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice
水稻发育
Genetic analysis of the metabolome exemplified using a rice population
基因组学、代谢组学、表型组学
2014.1月
A whole-genome SNP array (RICE6K) for genomic breeding in rice
基因组学
RICE6K
2014.2月
Grain Number, Plant Height, and Heading Date7 Is a Central Regulator of Growth, Development, and Stress Response
heading date7 (Ghd7)
基因组学
2014.3月
An expression quantitative trait loci-guided co-expression analysis for constructing regulatory network using a rice recombinant inbred line population
基因组学
Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies
基因组学
嵌入大量BAC end sequences (BESs)
2014.4月
Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping
基因组学
嵌入大量BAC end sequences (BESs)
2014.8月
Predicting hybrid performance in rice using genomic best linear unbiased prediction
基因组
相比较传统分子辅助选择效率更高、成本更低
2014.10月
Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice
基因组
high-throughput phenotyping has the potential to replace traditional phenotyping techniques
genome-wide association studies (GWAS)
highthroughput rice phenotyping facility (HRPF)
2014.12月
Understanding a key gene for thermosensitive genic male sterility in rice
雄性不育
基因组学
2015.5月
Differential expression of GS5 regulates grain size in rice
GS5
基因组
2015.9月
Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection
基因组
2015.12月
Coordinated regulation of vegetative and reproductive branching in rice
基因组
协同调节
2016.3月
Stacking S5-n and f5-n to overcome sterility in indica-japonica hybrid rice
杂种不育
S5
S5-n and f5-n:wide-compatibility alleles
试验结果有利于开发杂种优势
2016.8月
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
基因组
试验结果有利于作物的遗传改良
2016.9月
Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
基因组：建立籼稻的参考基因组
PacBio：一种测序技术
2016.10月
Metabolomic prediction of yield in hybrid rice
基因组
产量预测
marker-guided prediction method
代谢组数据预测
2016.11月
Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation
BPH9:抗褐飞虱（BPH)基因
抗褐飞虱（BPH)
nucleotide-binding and leucine-rich repeat (NLR）
nucleotide-binding (NB) and leucine-rich repeat (LRR)
2016.12月
PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice
光敏感周期雄性不育（PSMS)
Phased small-interfering RNAs (phasiRNAs)
photopheriod-sensetive genic male sterility 1 (Pms1)
PMS1T：非编码RNA
2017.7月
Processes Underlying a Reproductive Barrier in indica-japonica Rice Hybrids Revealed by Transcriptome Analysis
生殖障碍
S5,a killer-protector system
由三个相邻基因组成：ORF3, ORF4, and ORF5
2017.11月
Three representative inter and intra-subspecific crosses reveal the genetic architecture of reproductive isolation in rice
生殖隔离
2018.2月
A G-protein pathway determines grain size in rice
蛋白质组
颗粒大小
2018.3月
Genetic and molecular characterization of photoperiod and thermo-sensitive male sterility in rice
光周期敏感雄性不育、热敏感雄性不育
Environment-sensitive genic male sterility (EGMS)
2018.11月
Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses
phased small interfering RNAs
基因组学
2019.3月
Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis
杂种优势
基因组
Allele-specific expression (ASE)
2019.7月
Mapping quantitative trait loci using binned genotypes
基因组学
genome-wide association studies (GWAS)
新方法：bins
2019.8月
Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation
基因组学：基因组 的3D结构
H3K4me3
2020.1月
Bin-based genome-wide association analyses improve power and resolution in QTL mapping and identify favorable alleles from multiple parents in a four-way MAGIC rice population
基因组
bin map
genome-wide association studies (GWAS)
multiparent advanced generation intercross (MAGIC)
Hybrid breeding of rice via genomic selection
基因组
2020.2月
The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice
OsALDH2B1, that functions gene: a master regulator of the growth–defense trade-off in rice：该基因的缺失会增强对病原体的抗性，但会引起雄性不育、减少植株的大小、颗粒大小和数量
基因组学
2020.4月
Artificial Selection in Domestication and Breeding Prevents Speciation in Rice
物种的形成过程是可逆的
绘制S5（一个生殖隔离系统）的进化轨迹
Genomic Breeding of Green Super Rice Varieties and Their Deployment in Asia and Africa (vol 17, pg 132, 2020)
绿色超级水稻（GSR)、基因组
总结性论文
2020.5月
Crop genetics research in Asia improving food security and nutrition
基因组
宏观性论文
Integrative analysis of reference epigenomes in 20 rice varieties
表观基因组
enhanced chromatin immunoprecipitation (eChIP)
2020.7月
Ultrabithorax is a key regulator for the dimorphism of wings, a main cause for the outbreak of planthoppers in rice
稻飞虱
NlInR1 and NlInR2：insulin receptors，调节NlUbx（expression of Ultrabithorax）
2020.8月
5Gs for crop genetic improvement
基因组
作物育种中的5G技术
宏观性论文
2020.11月
Structural Insight into DNA Recognition by CCTNF-YBYC Complexes in Plant Photoperiodic Flowering
光周期、开花
蛋白质组、基因组学
水稻育种
抗病、抗虫
白叶枯病
转基因技术
XA gene
Improvement of bacterial blight resistance of 'Minghui 63', an elite restorer line of hybrid rice, by molecular marker-assisted selection
2000.1月
XA21，一种BB抗性基因
Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein
2004.2月
Xa26，抗白叶枯病.
Targeting xa13, a recessive gene for bacterial blight resistance in rice
2006.2月
xa13
Promoter mutations of an essential gene for pollen development result in disease resistance in rice
2006.5月
xa13、Xa13
基因组学
XA gene
New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line
2002.7月
Xa25(t)
BPH（褐飞虱）
基因组分析
Identification and mapping of two brown planthopper resistance genes in rice
2001.5月
Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation
2016.11月
Ultrabithorax is a key regulator for the dimorphism of wings, a main cause for the outbreak of planthoppers in rice
2020.7月
稻瘟病
群体遗传学
Pathotypes of Pyricularia grisea in rice fields of central and southern China
20001,8月
比较基因组学
Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley
2003.3月
鳞翅目昆虫：茎蛀虫、卷叶虫
基因组学
Site-independently integrated transgenes in the elite restorer rice line Minghui 63 allow removal of a selectable marker from the gene of interest by self-segregation
2003.5月
杀虫蛋白基因cry1Ab/cry1Ac
Analysis of rice genes induced by striped stemborer (Chilo suppressalis) attack identified a promoter fragment highly specifically responsive to insect feeding
2007.11月
Transgenic indica rice plants harboring a synthetic cry2A gene of Bacillus thuringiensis exhibit enhanced resistance against lepidopteran rice pests
2005.11月
cry2A* gene
转基因技术
Development of insect-resistant transgenic indica rice with a synthetic cry1C gene
2006.8月
cry1c* gene
水稻产量和品质
Grain Number, Plant Height, and Heading Date
基因组分析
Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid
2000.10月
The QTL controlling amino acid content in grains of rice (Oryza sativa) are co-localized with the regions involved in the amino acid metabolism pathway
2008.1月
2008.1月
Wx gene
Mapping quantitative trait loci for milling quality, protein content and color characteristics of rice using a recombinant inbred line population derived from an elite rice hybrid
2001.11月
Quantitative genetic basis of gelatinization temperature of rice
2001.11月
Identification of quantitative trait loci and epistatic interactions for plant height and heading date in rice
2002.3月
GS3
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
2006.4月
Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
2010.11月
GS5
Natural variation in GS5 plays an important role in regulating grain size and yield in rice
2011.12月
基因组
Differential expression of GS5 regulates grain size in rice
2015.5月
Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice
2008.4月
Grain Number, Plant Height, and Heading Date7 Is a Central Regulator of Growth, Development, and Stress Response
2014.2月
A G-protein pathway determines grain size in rice
2018.2月
Genetic and Molecular Bases of Rice Yield
2010.2月
转基因
Optimising the tissue culture conditions for high efficiency transformation of indica rice
2005.1月
烹饪品质和食用品质
基因组学
The main effects, epistatic effects and environmental interactions of QTLs on the cooking and eating quality of rice in a doubled-haploid line population
2005.5月
Genetic basis of 17 traits and viscosity parameters characterizing the eating and cooking quality of rice grain
2007.8月
茎的强度
基因组学
FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice
2009.4月
Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice
2009.11月
水稻育性
雄性不育
光周期敏感雄性不育(PSMS)
群体遗传学
Separation of the two-locus inheritance of photoperiod sensitive genic male sterility in rice and precise mapping the pms3 locus
2001.5月
Pms3的定位
基因组学
Identification of an 85-kb DNA fragment containing pms1, a locus for photoperiod-sensitive genic male sterility in rice
2001.10月
定位pms1
A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice
2012.2月
PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice
2016.12月
Structural Insight into DNA Recognition by CCTNF-YBYC Complexes in Plant Photoperiodic Flowering
2020.11月
热敏感雄性不育
Genetic and molecular characterization of photoperiod and thermo-sensitive male sterility in rice
2018.3月
基因组学
Understanding a key gene for thermosensitive genic male sterility in rice
2014.12月
The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice
2020.2月
杂种不育
群体遗传学
Male and female gamete abortions, and reduced affinity between the uniting gametes as the causes for sterility in an indicajaponica hybrid in rice
2004.7月
配子败育
Identification and confirmation of three neutral alleles conferring wide compatibility in inter-subspecific hybrids of rice (Oryza sativa L.) using near-isogenic lines
2005.8月
广亲和性
S5位点
基因组学
Delimitation of the rice wide compatibility gene S5(n) to a 40-kb DNA fragment
2005.10月
S5''gene
A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice
2008.8月
S5-i、S5-j、S5-n(三等位基因系统）
Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives
2011.3月
a killer-protector system encoded by three tightly linked genes [Open Reading Frame 3 (ORF3) to ORF5] regulates fertility in indica-japonica hybrids
2012.9月
Genetic dissection of embryo sac fertility, pollen fertility, and their contributions to spikelet fertility of intersubspecific hybrids in rice
2005.1月
Stacking S5-n and f5-n to overcome sterility in indica-japonica hybrid rice
2016.3月
S5-n and f5-n:wide-compatibility alleles
f5
基因组学
Fine mapping of f5-Du, a gene conferring wide-compatibility for pollen fertility in inter-subspecific hybrids of rice (Oryza sativa L.)
2006.1月
杂种优势
基因组学
Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid
2003.3月
解释杂种优势的遗传基础，可能会为一个世纪以来的辩论画上句号
Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs
2006.11月
为探究杂种优势的机制提供了新的途径
Heterosis in Rice Seedlings Its Relationship to Gibberellin Content and Expression of Gibberellin Metabolism and Signaling Genes
2011.8月
Genetic composition of yield heterosis in an elite rice hybrid
2012.9月
对解释杂种优势的机制有帮助
Comparative analysis of gene expression at early seedling stage between a rice hybrid and its parents using a cDNA microarray of 9198 uni-sequences
2006.11月
为探究杂种优势的机制和表型变异与基因表达多态性之间的关系提供了有用的信息
Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis
2019.3月
生殖隔离
Artificial Selection in Domestication and Breeding Prevents Speciation in Rice
2020.4月
绘制S5（一个生殖隔离系统）的进化轨迹
Understanding Reproductive Isolation Based on the Rice Model
2013.1月
Three representative inter and intra-subspecific crosses reveal the genetic architecture of reproductive isolation in rice
2017.11月
Processes Underlying a Reproductive Barrier in indica-japonica Rice Hybrids Revealed by Transcriptome Analysis
2017.月
S5,a killer-protector system
水稻发育
A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice
2013.12月
遗传改良
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
2016.8月
细胞生物学
减数分裂
基因组
Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis
2009.7月
Replication Protein A (RPA1a) Is Required for Meiotic and Somatic DNA Repair But Is Dispensable for DNA Replication and Homologous Recombination in Rice
2009.12月
纤维素
基因组
OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice
2011.3月
细胞凋亡
Rice APOPTOSIS INHIBITOR5 Coupled with Two DEAD-Box Adenosine 5 '-Triphosphate-Dependent RNA Helicases Regulates Tapetum Degeneration
2011.4月
XIAO
XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice
2012.5月
抗环境因素
对低氮、磷的耐受性
群体遗传学
QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid
2005.12月
基因工程
Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray
2006.3月
基因组学
Molecular analyses of the rice glutamate dehydrogenase gene family and their response to nitrogen and phosphorous deprivation
2009.7月
谷氨酸脱氢酶：由GDH gene表达
抗旱、耐盐性
转基因技术
Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice
2006.8月
SNAC1 gene ：与抗干旱、耐盐性有关
群体遗传学
Genetic basis of drought resistance at reproductive stage in rice Separation of drought tolerance from drought avoidance
2006.3月
抗旱、耐旱
基因组学
Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle
2007.3月
抗旱、耐盐
蛋白质组
基因组
热休克蛋白
Characterization of a unique genomic clone located 5 ' upstream of the Oshsp16.9B gene on chromosome 1 in rice (Oryza sativa L. cv Tainung No. 67)
2003.2月
Oshsp 16.9A、B、C均在1号染色体上
Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice
2009.6月
Hsp20 gene family
Hsp20:最丰富的小热休克蛋白质
硫氧还原蛋白
Sequence and expression analysis of the thioredoxin protein gene family in rice
2008.8月
OsTrx：硫氧还原蛋白的编码基因
OsTrx genes在不用组织、不同时期、不同环境因素下的表达水平不同
CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome
2012.4月
OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth
2013.8月
AP（天冬氨酸蛋白酶）, OsAP65
其他
基因组学
Development of enhancer trap lines for functional analysis of the rice genome
2003.8月
GAL4/VP16-UAS element为水稻的增强子陷阱提供了一个有用的系统（enhancer trap system
2003.8月
RID1, encoding a Cys2His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice
2008.9月
RID1能诱导开花
KT/HAK/KUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa)
2008.11月
The ankyrin repeat gene family in rice genome-wide identification, classification and expression profiling
2009.10月
OsANK genes：ankyrin repeat genes
A dynamic gene expression atlas covering the entire life cycle of rice
2010.3月
A global analysis of QTLs for expression variations in rice shoots at the early seedling stage
2010.9月
eQTLs：QTLs的表达水平
e-traits：expression traits
single-feature polymorphisms (SFPs)
A whole-genome SNP array (RICE6K) for genomic breeding in rice
2014.1月
An expression quantitative trait loci-guided co-expression analysis for constructing regulatory network using a rice recombinant inbred line population
2014.3月
Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping
2014.4月
嵌入大量BAC end sequences (BESs)
Predicting hybrid performance in rice using genomic best linear unbiased prediction
2014.8月
相比较传统分子辅助选择效率更高、成本更低
Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection
2015.9月
Coordinated regulation of vegetative and reproductive branching in rice
2015.12月
协同调节
Mapping quantitative trait loci using binned genotypes
2019.7月
genome-wide association studies (GWAS)
新方法：bins
总结回顾性、宏观性论文
基因组
Rice mutant resources for gene discovery
2004.2月
回顾了水稻突变体资源现状，基因功能性分析的工具，并对通过国际合作加快水稻基因的发现作了展望
How can we use genomics to improve cereals with rice as a reference genome
2005.9月
Rice functional genomics research in China
2007.6月
功能基因组学
Rice 2020: A Call For An International Coordinated Effort In Rice Functional Genomics
2008.9月
Mutant Resources in Rice for Functional Genomics of the Grasses
2009,。1月
Rice functional genomics research in China
2007.6月
Rice Genome Research Current Status and Future Perspectives
水稻基因组研究的回顾和对未来的展望
2008.11月
Crop genetics research in Asia improving food security and nutrition
2020.5月
5Gs for crop genetic improvement
2020.8月
作物育种中的5G技术
绿色超级水稻
Strategies for developing green super rice
2007.10月
Genomic Breeding of Green Super Rice Varieties and Their Deployment in Asia and Africa (vol 17, pg 132, 2020)
2020.4月
基因工程
Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63
2005.6月
收集和分析籼稻的ESTs
群体遗传学
Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa)
2006.7月
四个性状：SPP、GPP、HD、PH
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
2010.6月
建立高密度连锁图
代谢生物学
The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism
2007.5月
YABBY1 (YAB1)起对赤霉素的生物合成起负反馈
biosynthetic genes： GA3ox2 and GA20ox2
氮的新陈代谢
Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic stress responses in rice
2009.3月
GS gene：谷氨酰胺合成酶基因
GS1、2过度表达的植株展示出对盐、干旱、寒冷、除草剂的抗性
Over-expression of aspartate aminotransferase genes in rice resulted in altered nitrogen metabolism and increased amino acid content in seeds
2009.5月
AAT：天冬氨酸氨基转移酶
AAT gene:OsAAT1~3
Genetic analysis of the metabolome exemplified using a rice population
2013.12月
Metabolomic prediction of yield in hybrid rice
2016.10月
生物信息学
基因组
水稻变体数据库
RMD a rice mutant database for functional analysis of the rice genome
2006.1月
RMD
功能基因组学
RICD A rice indica cDNA database resource for rice functional genomics
2008.11月
Single feature polymorphisms between two rice cultivars detected using a median polish method
2009.6月
Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method
2011.5月
Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
2016.9月
PacBio：一种测序技术
建立籼稻的参考基因组