论文时间轴

一图掌握“论文时间轴”，清楚标明每个时间阶段需要的东西与做的事情，方面时间安排与把控，非常实用，值得收藏。

论文时间轴

2000.1月

Improvement of bacterial blight resistance of 'Minghui 63', an elite restorer line of hybrid rice, by molecular marker-assisted selection

转基因技术/基因工程：XA21，一种BB抗性基因

2000.10月

Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid

基因组分析：调控水稻颗粒品质和胚乳不透明度的QTLs

2001.5月

Identification and mapping of two brown planthopper resistance genes in rice

基因组分析：两个抗BPH的基因组区域

rice breeding programs

Separation of the two-locus inheritance of photoperiod sensitive genic male sterility in rice and precise mapping the pms3 locus

群体遗传：Pms3的定位

rice breeding programs

PSGMS

2001.8月

Pathotypes of Pyricularia grisea in rice fields of central and southern China

rice breeding programs

群体遗传学：分析中国13个中部和南部省份的稻瘟病致病类型

2001.10月

Identification of an 85-kb DNA fragment containing pms1, a locus for photoperiod-sensitive genic male sterility in rice

基因组学：定位pms1

2001.11月

Mapping quantitative trait loci for milling quality, protein content and color characteristics of rice using a recombinant inbred line population derived from an elite rice hybrid

基因组学：糙米率的QTLs、精米率的QTLs、Wx gene(由QTLs调节、决定蛋白质含量、面粉色泽）

Quantitative genetic basis of gelatinization temperature of rice

基因组学：定位了8个跟水稻淀粉糊化性质相关的基因座；其中Wx gene 和染色体11扮演主要作用

2002.3月

Identification of quantitative trait loci and epistatic interactions for plant height and heading date in rice

基因组学：与株高和抽穗期有关的QTLs

2002.7月

New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line

基因组学：定位白叶枯病抗性基因Xa25（t)的基因座，且基因组位置类似于稻瘟病抗性基因Pi-ta、Pi-ta2

2002.12月

Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.)

基因组：2240种SSR标记可作为公共的研究资源

2003.2月

Characterization of a unique genomic clone located 5 ' upstream of the Oshsp16.9B gene on chromosome 1 in rice (Oryza sativa L. cv Tainung No. 67)

基因组学：Oshsp 16.9A、B、C均在1号染色体上

2003.3月

Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid

基因组学和群体遗传学：解释杂种优势的遗传基础，可能会为一个世纪以来的辩论画上句号

Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley

稻瘟病

比较基因组学：帮助理解基因组的功能和进化动力

2003.5月

Site-independently integrated transgenes in the elite restorer rice line Minghui 63 allow removal of a selectable marker from the gene of interest by self-segregation

基因组学：基因位点的整合和选择性标记的转移将帮助转基因株系TT51-1对抗病虫感染和爆发

cryIAb/cryIAc：insecticidal protein gene

hph：selectable marker gene

2003.8月

Development of enhancer trap lines for functional analysis of the rice genome

基因组:GAL4/VP16-UAS element为水稻的增强子陷阱提供了一个有用的系统（enhancer trap system

2004.2月

Rice mutant resources for gene discovery

基因组：总结性文章，回顾了水稻突变体资源现状，基因功能性分析的工具，并对通过国际合作加快水稻基因的发现作了展望

Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein

基因组学/转基因：Xa26，抗白叶枯病.

2004.7月

Male and female gamete abortions, and reduced affinity between the uniting gametes as the causes for sterility in an indicajaponica hybrid in rice

群体遗传学：杂种不育、配子不育

胚囊、花粉、花粉管

2005.1月

Genetic dissection of embryo sac fertility, pollen fertility, and their contributions to spikelet fertility of intersubspecific hybrids in rice

rice breeding programs

基因组学：S5位点：由小穗育性分析确定的广亲和性位点，同时是胚囊育性的主要位点；5号染色体的一个QTL对花粉育性有主要影响；8号染色体一个QTL对小穗育性有主要影响

Optimising the tissue culture conditions for high efficiency transformation of indica rice

转基因：两种new media 能极大的促进籼稻的转化效率

2005.5月

The main effects, epistatic effects and environmental interactions of QTLs on the cooking and eating quality of rice in a doubled-haploid line population

基因组学：分析了对AC、GC、GT有主要效应的QTLs

2005.6月

Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63

基因工程：收集和分析籼稻的ESTs

2005.8月

Identification and confirmation of three neutral alleles conferring wide compatibility in inter-subspecific hybrids of rice (Oryza sativa L.) using near-isogenic lines

rice breeding programs

群体遗传学：3个QTLs，f5,f6,S5。f5对花粉和小穗育性有影响；f6和S5对小穗育性有影响

2005.9月

How can we use genomics to improve cereals with rice as a reference genome

基因组：宏观性论文

2005.10月

Delimitation of the rice wide compatibility gene S5(n) to a 40-kb DNA fragment

intersubspecific hybrid breeding programs

S5''gene

rice breeding programs.

基因组学

2005.11月

Transgenic indica rice plants harboring a synthetic cry2A gene of Bacillus thuringiensis exhibit enhanced resistance against lepidopteran rice pests

转基因：主要株系有2A-1、2、3、4

cry2A* gene

2005.12月

QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid

群体遗传学

对低氮的耐受性

2006.1月

Fine mapping of f5-Du, a gene conferring wide-compatibility for pollen fertility in inter-subspecific hybrids of rice (Oryza sativa L.)

rice breeding programs.

基因组学：f5区域由5个BAC或PAC组成

RMD a rice mutant database for functional analysis of the rice genome

基因组学

RMD

2006.2月

Genetic basis of drought resistance at reproductive stage in rice Separation of drought tolerance from drought avoidance

抗旱、耐旱

群体遗传学

Targeting xa13, a recessive gene for bacterial blight resistance in rice

breeding programs

xa13

4个标记E6a、SR6、ST9、SR11与xa13紧密连锁

2006.3月

Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray

低氮压力

基因工程

2006.4月

GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein

GS3

基因组学：GS3可能对颗粒大小有消极作用

2006.5月

Promoter mutations of an essential gene for pollen development result in disease resistance in rice

xa13 allele:抗白叶枯病。由Xa13 allele的启动子突变形成

基因组学

2006.6月

Establishment of a patterned GAL4-VP16 transactivation system for discovering gene function in rice

二进制反式激活系统GAL4-VP16–UAS

GAL4-VP16:反式激活因子基因

UAS:upstream activation sequence。GAL4的顺式作用元件

基因组学

2006.7月

Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa)

NILs development strategies

基因组学/群体遗传学

四个性状：SPP、GPP、HD、PH

2006.8月

Development of insect-resistant transgenic indica rice with a synthetic cry1C gene

cry1C* gene

resistance management strategy of transgenic rice

转基因技术：T1C-19（带有Cry1C* protein）能用来生产抗昆虫杂交水稻（抗蛀茎虫和甘薯麦蛾）。

Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice

SNAC1 gene ：与抗干旱、耐盐性有关

转基因水稻

2006.11月

Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs

为探究杂种优势的机制提供了新的途径

基因组学

2006.12月

Comparative analysis of gene expression at early seedling stage between a rice hybrid and its parents using a cDNA microarray of 9198 uni-sequences

为探究杂种优势的机制和表型变异与基因表达多态性之间的关系提供了有用的信息

基因组学

2007.3月

Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle

抗旱、耐盐

基因组学

organ-specific transcription responses

Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library

基因组学

T-DNA insertion

enhancer-trap mutant library

flanking sequence tags (FSTs)

2007.4月

High-throughput binary vectors for plant gene function analysis

基因组学：

High-throughput Binary Vectors

2007.5月

The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism

biosynthetic genes： GA3ox2 and GA20ox2

基因组学：YABBY1 (YAB1)起对赤霉素的生物合成起负反馈

2007.6月

Rice functional genomics research in China

基因组学：宏观性论文

rice functional genomics research programmes

2007.8月

Genetic basis of 17 traits and viscosity parameters characterizing the eating and cooking quality of rice grain

eating and cooking quality of rice grain

基因组学

2007.10月

Strategies for developing green super rice

绿色超级水稻：宏观性论文

2007.11月

Analysis of rice genes induced by striped stemborer (Chilo suppressalis) attack identified a promoter fragment highly specifically responsive to insect feeding

蛀茎虫

基因组学：对发展抗虫的转基因水稻有帮助

2008.1月

The QTL controlling amino acid content in grains of rice (Oryza sativa) are co-localized with the regions involved in the amino acid metabolism pathway

水稻颗粒质量

rice breeding programs.

基因组学

amino acid content (AAC)

2008.4月

Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice

qSSP7：控制小穗的数量，单孟德尔因子

qSSP7在杂交水稻纯合子中能进一步提高产量

spikelets per panicle (SPP)

2008.8月

A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice

S5

基因组学：S5-i、S5-j、S5-n(三等位基因系统

Sequence and expression analysis of the thioredoxin protein gene family in rice

硫氧还原蛋白

OsTrx：硫氧还原蛋白的编码基因

基因组学：OsTrx genes在不用组织、不同时期、不同环境因素下的表达水平不同

2008.9月

Rice 2020: A Call For An International Coordinated Effort In Rice Functional Genomics

功能基因组学：宏观性论文

Rice2020:the name of a project

RID1, encoding a Cys2His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice

基因组：RID1能诱导开花

2008.11月

KTHAKKUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa)

基因组学

OsHAK genes

RICD A rice indica cDNA database resource for rice functional genomics

功能基因组学：

生物信息

Rice Genome Research Current Status and Future Perspectives

基因组：宏观性论文

2009.1月

Mutant Resources in Rice for Functional Genomics of the Grasses

功能性基因组学

2009.3月

Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic stress responses in rice

氮的新陈代谢

GS gene：谷氨酰胺合成酶基因

GS1;2过度表达的植株展示出对盐、干旱、寒冷、除草剂的抗性

基因组学

2009.4月

FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice

FC1 gene：对木质素的合成和茎的强度有重要作用

基因组学

2009.5月

Over-expression of aspartate aminotransferase genes in rice resulted in altered nitrogen metabolism and increased amino acid content in seeds

氮的新陈代谢

AAT：天冬氨酸氨基转移酶

基因组学

AAT gene:OsAAT1~3

2009.6月

Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice

Hsp20 gene family

Hsp20:最丰富的小热休克蛋白质

HSP:热休克蛋白质

基因组学

Single feature polymorphisms between two rice cultivars detected using a median polish method

single feature polymorphisms (SFPs)

生物信息

2009.7月

Molecular analyses of the rice glutamate dehydrogenase gene family and their response to nitrogen and phosphorous deprivation

氮、磷

谷氨酸脱氢酶：由GDH gene表达

基因组学：four putative GDH genes (OsGDH1-4)

Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis

PAIR3 gene:在减数分裂时对同源染色体配对和联会十分重要

基因组学

2009.10月

The ankyrin repeat gene family in rice genome-wide identification, classification and expression profiling

基因组学

OsANK genes：ankyrin repeat genes

2009.11月

Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice

culm mechanical strength

基因组学

OsBC1L：多基因家族，包含BC1

2009.12月

Replication Protein A (RPA1a) Is Required for Meiotic and Somatic DNA Repair But Is Dispensable for DNA Replication and Homologous Recombination in Rice

基因组学

OsRPA1a

2010.2月

Genetic and Molecular Bases of Rice Yield

基因组学、分子生物学

Rice yield包括number of panicles, number of grains per panicle, and grain weight

2010.3月

A dynamic gene expression atlas covering the entire life cycle of rice

基因组学

2010.6月

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing

群体遗传学、基因组

建立高密度连锁图的方法

2010.9月

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

基因组

eQTLs：QTLs的表达水平

e-traits：expression traits

single-feature polymorphisms (SFPs)

2010.11月

Linking differential domain functions of the GS3 protein to natural variation of grain size in rice

GS3： a major quantitative trait locus for grain size

GS3 protein有4种结构域：organ size regulation (OSR) domain、a transmembrane domain、tumor necrosis factor receptor/nerve growth factor receptor (TNFR/NGFR) domain、von Willebrand factor type C (VWFC)

蛋白质组、基因组

2011.3月

Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives

S5

基因组学：

wide-compatibility gene (WCG)

OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice

纤维素

基因组学

Osbc1l4 (Oryza sativa brittle culm 1 like 4)

cellulose synthase genes (CESAs)

T-DNA insertion mutant library

2011.4月

Rice APOPTOSIS INHIBITOR5 Coupled with Two DEAD-Box Adenosine 5 '-Triphosphate-Dependent RNA Helicases Regulates Tapetum Degeneration

Programmed cell death (PCD)

API5:编码抗细胞凋亡蛋白质Api5的同源物

API5、AIP1、AIP2、CP1与配子不育有关

2011.5月

Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method

生物信息

2011.8月

Heterosis in Rice Seedlings Its Relationship to Gibberellin Content and Expression of Gibberellin Metabolism and Signaling Genes

杂种优势

endogenous gibberellin (GA)

2011.12月

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

GS5的自然变异对增加水稻产量有帮助

基因组学

2012.2月

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

光周期敏感雄性不育（PSMS）

long noncoding RNAs (lncRNAs)

long-day– specific male-fertility–associated RNA (LDMAR)

2012.4月

CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome

基因组

rice CHD3 protein CHR729

H3K4me2、H3K27me3

2012.5月

XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice

xiao:a rice T-DNA insertion mutant for organ size

细胞生物学

2012.9月

Genetic composition of yield heterosis in an elite rice hybrid

对解释杂种优势的机制有帮助

A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice

S5

杂交不育

a killer-protector system encoded by three tightly linked genes [Open Reading Frame 3 (ORF3) to ORF5] regulates fertility in indica-japonica hybrids

2013.1月

Understanding Reproductive Isolation Based on the Rice Model

生殖隔离

总结性论文：杂种不育的分子特征

killer–protector system

2013.8月

OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth

AP（天冬氨酸蛋白酶）, OsAP65

蛋白质组、基因组

2013.12月

A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice

水稻发育

Genetic analysis of the metabolome exemplified using a rice population

基因组学、代谢组学、表型组学

2014.1月

A whole-genome SNP array (RICE6K) for genomic breeding in rice

基因组学

RICE6K

2014.2月

Grain Number, Plant Height, and Heading Date7 Is a Central Regulator of Growth, Development, and Stress Response

heading date7 (Ghd7)

基因组学

2014.3月

An expression quantitative trait loci-guided co-expression analysis for constructing regulatory network using a rice recombinant inbred line population

基因组学

Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies

基因组学

嵌入大量BAC end sequences (BESs)

2014.4月

Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping

基因组学

嵌入大量BAC end sequences (BESs)

2014.8月

Predicting hybrid performance in rice using genomic best linear unbiased prediction

基因组

相比较传统分子辅助选择效率更高、成本更低

2014.10月

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

基因组

high-throughput phenotyping has the potential to replace traditional phenotyping techniques

genome-wide association studies (GWAS)

highthroughput rice phenotyping facility (HRPF)

2014.12月

Understanding a key gene for thermosensitive genic male sterility in rice

雄性不育

基因组学

2015.5月

Differential expression of GS5 regulates grain size in rice

GS5

基因组

2015.9月

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

基因组

2015.12月

Coordinated regulation of vegetative and reproductive branching in rice

基因组

协同调节

2016.3月

Stacking S5-n and f5-n to overcome sterility in indica-japonica hybrid rice

杂种不育

S5

S5-n and f5-n:wide-compatibility alleles

试验结果有利于开发杂种优势

2016.8月

Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63

基因组

试验结果有利于作物的遗传改良

2016.9月

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

基因组：建立籼稻的参考基因组

PacBio：一种测序技术

2016.10月

Metabolomic prediction of yield in hybrid rice

基因组

产量预测

marker-guided prediction method

代谢组数据预测

2016.11月

Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation

BPH9:抗褐飞虱（BPH)基因

抗褐飞虱（BPH)

nucleotide-binding and leucine-rich repeat (NLR）

nucleotide-binding (NB) and leucine-rich repeat (LRR)

2016.12月

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

光敏感周期雄性不育（PSMS)

Phased small-interfering RNAs (phasiRNAs)

photopheriod-sensetive genic male sterility 1 (Pms1)

PMS1T：非编码RNA

2017.7月

Processes Underlying a Reproductive Barrier in indica-japonica Rice Hybrids Revealed by Transcriptome Analysis

生殖障碍

S5,a killer-protector system

由三个相邻基因组成：ORF3, ORF4, and ORF5

2017.11月

Three representative inter and intra-subspecific crosses reveal the genetic architecture of reproductive isolation in rice

生殖隔离

2018.2月

A G-protein pathway determines grain size in rice

蛋白质组

颗粒大小

2018.3月

Genetic and molecular characterization of photoperiod and thermo-sensitive male sterility in rice

光周期敏感雄性不育、热敏感雄性不育

Environment-sensitive genic male sterility (EGMS)

2018.11月

Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses

phased small interfering RNAs

基因组学

2019.3月

Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis

杂种优势

基因组

Allele-specific expression (ASE)

2019.7月

Mapping quantitative trait loci using binned genotypes

基因组学

genome-wide association studies (GWAS)

新方法：bins

2019.8月

Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation

基因组学：基因组 的3D结构

H3K4me3

2020.1月

Bin-based genome-wide association analyses improve power and resolution in QTL mapping and identify favorable alleles from multiple parents in a four-way MAGIC rice population

基因组

bin map

genome-wide association studies (GWAS)

multiparent advanced generation intercross (MAGIC)

Hybrid breeding of rice via genomic selection

基因组

2020.2月

The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice

OsALDH2B1, that functions gene: a master regulator of the growth–defense trade-off in rice：该基因的缺失会增强对病原体的抗性，但会引起雄性不育、减少植株的大小、颗粒大小和数量

基因组学

2020.4月

Artificial Selection in Domestication and Breeding Prevents Speciation in Rice

物种的形成过程是可逆的

绘制S5（一个生殖隔离系统）的进化轨迹

Genomic Breeding of Green Super Rice Varieties and Their Deployment in Asia and Africa (vol 17, pg 132, 2020)

绿色超级水稻（GSR)、基因组

总结性论文

2020.5月

Crop genetics research in Asia improving food security and nutrition

基因组

宏观性论文

Integrative analysis of reference epigenomes in 20 rice varieties

表观基因组

enhanced chromatin immunoprecipitation (eChIP)

2020.7月

Ultrabithorax is a key regulator for the dimorphism of wings, a main cause for the outbreak of planthoppers in rice

稻飞虱

NlInR1 and NlInR2：insulin receptors，调节NlUbx（expression of Ultrabithorax）

2020.8月

5Gs for crop genetic improvement

基因组

作物育种中的5G技术

宏观性论文

2020.11月

Structural Insight into DNA Recognition by CCTNF-YBYC Complexes in Plant Photoperiodic Flowering

光周期、开花

蛋白质组、基因组学

水稻育种

抗病、抗虫

白叶枯病

转基因技术

XA gene

Improvement of bacterial blight resistance of 'Minghui 63', an elite restorer line of hybrid rice, by molecular marker-assisted selection

2000.1月

XA21，一种BB抗性基因

Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein

2004.2月

Xa26，抗白叶枯病.

Targeting xa13, a recessive gene for bacterial blight resistance in rice

2006.2月

xa13

Promoter mutations of an essential gene for pollen development result in disease resistance in rice

2006.5月

xa13、Xa13

基因组学

XA gene

New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line

2002.7月

Xa25(t)

BPH（褐飞虱）

基因组分析

Identification and mapping of two brown planthopper resistance genes in rice

2001.5月

Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation

2016.11月

Ultrabithorax is a key regulator for the dimorphism of wings, a main cause for the outbreak of planthoppers in rice

2020.7月

稻瘟病

群体遗传学

Pathotypes of Pyricularia grisea in rice fields of central and southern China

20001,8月

比较基因组学

Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley

2003.3月

鳞翅目昆虫：茎蛀虫、卷叶虫

基因组学

Site-independently integrated transgenes in the elite restorer rice line Minghui 63 allow removal of a selectable marker from the gene of interest by self-segregation

2003.5月

杀虫蛋白基因cry1Ab/cry1Ac

Analysis of rice genes induced by striped stemborer (Chilo suppressalis) attack identified a promoter fragment highly specifically responsive to insect feeding

2007.11月

Transgenic indica rice plants harboring a synthetic cry2A gene of Bacillus thuringiensis exhibit enhanced resistance against lepidopteran rice pests

2005.11月

cry2A* gene

转基因技术

Development of insect-resistant transgenic indica rice with a synthetic cry1C gene

2006.8月

cry1c* gene

水稻产量和品质

Grain Number, Plant Height, and Heading Date

基因组分析

Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid

2000.10月

The QTL controlling amino acid content in grains of rice (Oryza sativa) are co-localized with the regions involved in the amino acid metabolism pathway

2008.1月

2008.1月

Wx gene

Mapping quantitative trait loci for milling quality, protein content and color characteristics of rice using a recombinant inbred line population derived from an elite rice hybrid

2001.11月

Quantitative genetic basis of gelatinization temperature of rice

2001.11月

Identification of quantitative trait loci and epistatic interactions for plant height and heading date in rice

2002.3月

GS3

GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein

2006.4月

Linking differential domain functions of the GS3 protein to natural variation of grain size in rice

2010.11月

GS5

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

2011.12月

基因组

Differential expression of GS5 regulates grain size in rice

2015.5月

Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice

2008.4月

Grain Number, Plant Height, and Heading Date7 Is a Central Regulator of Growth, Development, and Stress Response

2014.2月

A G-protein pathway determines grain size in rice

2018.2月

Genetic and Molecular Bases of Rice Yield

2010.2月

转基因

Optimising the tissue culture conditions for high efficiency transformation of indica rice

2005.1月

烹饪品质和食用品质

基因组学

The main effects, epistatic effects and environmental interactions of QTLs on the cooking and eating quality of rice in a doubled-haploid line population

2005.5月

Genetic basis of 17 traits and viscosity parameters characterizing the eating and cooking quality of rice grain

2007.8月

茎的强度

基因组学

FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice

2009.4月

Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice

2009.11月

水稻育性

雄性不育

光周期敏感雄性不育(PSMS)

群体遗传学

Separation of the two-locus inheritance of photoperiod sensitive genic male sterility in rice and precise mapping the pms3 locus

2001.5月

Pms3的定位

基因组学

Identification of an 85-kb DNA fragment containing pms1, a locus for photoperiod-sensitive genic male sterility in rice

2001.10月

定位pms1

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

2012.2月

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

2016.12月

Structural Insight into DNA Recognition by CCTNF-YBYC Complexes in Plant Photoperiodic Flowering

2020.11月

热敏感雄性不育

Genetic and molecular characterization of photoperiod and thermo-sensitive male sterility in rice

2018.3月

基因组学

Understanding a key gene for thermosensitive genic male sterility in rice

2014.12月

The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice

2020.2月

杂种不育

群体遗传学

Male and female gamete abortions, and reduced affinity between the uniting gametes as the causes for sterility in an indicajaponica hybrid in rice

2004.7月

配子败育

Identification and confirmation of three neutral alleles conferring wide compatibility in inter-subspecific hybrids of rice (Oryza sativa L.) using near-isogenic lines

2005.8月

广亲和性

S5位点

基因组学

Delimitation of the rice wide compatibility gene S5(n) to a 40-kb DNA fragment

2005.10月

S5''gene

A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice

2008.8月

S5-i、S5-j、S5-n(三等位基因系统）

Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives

2011.3月

a killer-protector system encoded by three tightly linked genes [Open Reading Frame 3 (ORF3) to ORF5] regulates fertility in indica-japonica hybrids

2012.9月

Genetic dissection of embryo sac fertility, pollen fertility, and their contributions to spikelet fertility of intersubspecific hybrids in rice

2005.1月

Stacking S5-n and f5-n to overcome sterility in indica-japonica hybrid rice

2016.3月

S5-n and f5-n:wide-compatibility alleles

f5

基因组学

Fine mapping of f5-Du, a gene conferring wide-compatibility for pollen fertility in inter-subspecific hybrids of rice (Oryza sativa L.)

2006.1月

杂种优势

基因组学

Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid

2003.3月

解释杂种优势的遗传基础，可能会为一个世纪以来的辩论画上句号

Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs

2006.11月

为探究杂种优势的机制提供了新的途径

Heterosis in Rice Seedlings Its Relationship to Gibberellin Content and Expression of Gibberellin Metabolism and Signaling Genes

2011.8月

Genetic composition of yield heterosis in an elite rice hybrid

2012.9月

对解释杂种优势的机制有帮助

Comparative analysis of gene expression at early seedling stage between a rice hybrid and its parents using a cDNA microarray of 9198 uni-sequences

2006.11月

为探究杂种优势的机制和表型变异与基因表达多态性之间的关系提供了有用的信息

Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis

2019.3月

生殖隔离

Artificial Selection in Domestication and Breeding Prevents Speciation in Rice

2020.4月

绘制S5（一个生殖隔离系统）的进化轨迹

Understanding Reproductive Isolation Based on the Rice Model

2013.1月

Three representative inter and intra-subspecific crosses reveal the genetic architecture of reproductive isolation in rice

2017.11月

Processes Underlying a Reproductive Barrier in indica-japonica Rice Hybrids Revealed by Transcriptome Analysis

2017.月

S5,a killer-protector system

水稻发育

A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice

2013.12月

遗传改良

Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63

2016.8月

细胞生物学

减数分裂

基因组

Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis

2009.7月

Replication Protein A (RPA1a) Is Required for Meiotic and Somatic DNA Repair But Is Dispensable for DNA Replication and Homologous Recombination in Rice

2009.12月

纤维素

基因组

OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice

2011.3月

细胞凋亡

Rice APOPTOSIS INHIBITOR5 Coupled with Two DEAD-Box Adenosine 5 '-Triphosphate-Dependent RNA Helicases Regulates Tapetum Degeneration

2011.4月

XIAO

XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice

2012.5月

抗环境因素

对低氮、磷的耐受性

群体遗传学

QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid

2005.12月

基因工程

Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray

2006.3月

基因组学

Molecular analyses of the rice glutamate dehydrogenase gene family and their response to nitrogen and phosphorous deprivation

2009.7月

谷氨酸脱氢酶：由GDH gene表达

抗旱、耐盐性

转基因技术

Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice

2006.8月

SNAC1 gene ：与抗干旱、耐盐性有关

群体遗传学

Genetic basis of drought resistance at reproductive stage in rice Separation of drought tolerance from drought avoidance

2006.3月

抗旱、耐旱

基因组学

Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle

2007.3月

抗旱、耐盐

蛋白质组

基因组

热休克蛋白

Characterization of a unique genomic clone located 5 ' upstream of the Oshsp16.9B gene on chromosome 1 in rice (Oryza sativa L. cv Tainung No. 67)

2003.2月

Oshsp 16.9A、B、C均在1号染色体上

Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice

2009.6月

Hsp20 gene family

Hsp20:最丰富的小热休克蛋白质

硫氧还原蛋白

Sequence and expression analysis of the thioredoxin protein gene family in rice

2008.8月

OsTrx：硫氧还原蛋白的编码基因

OsTrx genes在不用组织、不同时期、不同环境因素下的表达水平不同

CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome

2012.4月

OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth

2013.8月

AP（天冬氨酸蛋白酶）, OsAP65

其他

基因组学

Development of enhancer trap lines for functional analysis of the rice genome

2003.8月

GAL4/VP16-UAS element为水稻的增强子陷阱提供了一个有用的系统（enhancer trap system

2003.8月

RID1, encoding a Cys2His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice

2008.9月

RID1能诱导开花

KT/HAK/KUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa)

2008.11月

The ankyrin repeat gene family in rice genome-wide identification, classification and expression profiling

2009.10月

OsANK genes：ankyrin repeat genes

A dynamic gene expression atlas covering the entire life cycle of rice

2010.3月

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

2010.9月

eQTLs：QTLs的表达水平

e-traits：expression traits

single-feature polymorphisms (SFPs)

A whole-genome SNP array (RICE6K) for genomic breeding in rice

2014.1月

An expression quantitative trait loci-guided co-expression analysis for constructing regulatory network using a rice recombinant inbred line population

2014.3月

Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping

2014.4月

嵌入大量BAC end sequences (BESs)

Predicting hybrid performance in rice using genomic best linear unbiased prediction

2014.8月

相比较传统分子辅助选择效率更高、成本更低

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

2015.9月

Coordinated regulation of vegetative and reproductive branching in rice

2015.12月

协同调节

Mapping quantitative trait loci using binned genotypes

2019.7月

genome-wide association studies (GWAS)

新方法：bins

总结回顾性、宏观性论文

基因组

Rice mutant resources for gene discovery

2004.2月

回顾了水稻突变体资源现状，基因功能性分析的工具，并对通过国际合作加快水稻基因的发现作了展望

How can we use genomics to improve cereals with rice as a reference genome

2005.9月

Rice functional genomics research in China

2007.6月

功能基因组学

Rice 2020: A Call For An International Coordinated Effort In Rice Functional Genomics

2008.9月

Mutant Resources in Rice for Functional Genomics of the Grasses

2009,。1月

Rice functional genomics research in China

2007.6月

Rice Genome Research Current Status and Future Perspectives

水稻基因组研究的回顾和对未来的展望

2008.11月

Crop genetics research in Asia improving food security and nutrition

2020.5月

5Gs for crop genetic improvement

2020.8月

作物育种中的5G技术

绿色超级水稻

Strategies for developing green super rice

2007.10月

Genomic Breeding of Green Super Rice Varieties and Their Deployment in Asia and Africa (vol 17, pg 132, 2020)

2020.4月

基因工程

Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63

2005.6月

收集和分析籼稻的ESTs

群体遗传学

Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa)

2006.7月

四个性状：SPP、GPP、HD、PH

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing

2010.6月

建立高密度连锁图

代谢生物学

The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism

2007.5月

YABBY1 (YAB1)起对赤霉素的生物合成起负反馈

biosynthetic genes： GA3ox2 and GA20ox2

氮的新陈代谢

Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic stress responses in rice

2009.3月

GS gene：谷氨酰胺合成酶基因

GS1、2过度表达的植株展示出对盐、干旱、寒冷、除草剂的抗性

Over-expression of aspartate aminotransferase genes in rice resulted in altered nitrogen metabolism and increased amino acid content in seeds

2009.5月

AAT：天冬氨酸氨基转移酶

AAT gene:OsAAT1~3

Genetic analysis of the metabolome exemplified using a rice population

2013.12月

Metabolomic prediction of yield in hybrid rice

2016.10月

生物信息学

基因组

水稻变体数据库

RMD a rice mutant database for functional analysis of the rice genome

2006.1月

RMD

功能基因组学

RICD A rice indica cDNA database resource for rice functional genomics

2008.11月

Single feature polymorphisms between two rice cultivars detected using a median polish method

2009.6月

Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method

2011.5月

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

2016.9月

PacBio：一种测序技术

建立籼稻的参考基因组